PlantPromoterDB promoter information of AT3G52400
Summary of Gene (AT3G52400)
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Overview
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Focused view (chromosome 3: 19428032-19426833)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G52400 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G52400
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 18 | - | 19427090 | -58 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 19427137 | -105 |
| TSS clone | A | clone | - | 19427132 | -100 |
| TSS clone | A | clone | - | 19427090 | -58 |
| TSS clone | A | clone | - | 19427089 | -57 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CAATATAAATA | - | 19427116 | 19427126 | -84 | -94 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACCGCGTTTTA | - | 19427202 | 19427213 | -170 | -181 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG566 | CGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AACCCGGTT | - | 19427263 | 19427271 | -231 | -239 | |||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG455 | ACCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TGACGTGG | - | 19427345 | 19427352 | -313 | -320 | |||
| AtREG419 | TGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||