PlantPromoterDB promoter information of AT3G52590
Summary of Gene (AT3G52590)
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Overview
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Focused view (chromosome 3: 19504668-19505867)
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Genome position
from initiation codon AT3G52590.1 TSS from cDNA TSS information AT3G52590 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G52590
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 172 | + | 19505646 | -22 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 19505640 | -28 |
| TSS clone | T | clone | + | 19505641 | -27 |
| TSS clone | A | clone | + | 19505642 | -26 |
| TSS clone | C | clone | + | 19505643 | -25 |
| TSS clone | T | clone | + | 19505645 | -23 |
| TSS clone | G | clone | + | 19505646 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CATATATAAACC | + | 19505605 | 19505616 | -63 | -52 |
| Y Patch | CCTCCTCCT | + | 19505619 | 19505627 | -49 | -41 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAAAGCCCACT | + | 19505481 | 19505492 | -187 | -176 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG518 | AAGCCCAC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | AGTGGGCTGGGCCTTTT | + | 19505531 | 19505547 | -137 | -121 | |||
| AtREG510 | AGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG454 | GGCTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG410 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG359 | GGGCCTTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | TAAAGGCC | + | 19505552 | 19505559 | -116 | -109 | |||
| AtREG467 | TAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCAATAT | + | 19505568 | 19505577 | -100 | -91 | |||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG509 | CCCAATAT | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCTAGA | + | 19505585 | 19505592 | -83 | -76 | |||
| AtREG658 | ACCCTAGA | PPDB Motif | ACCCT | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||