Summary of Gene (AT3G53235.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G53235.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 19734747 | -52 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTCTATAAAAA | - | 19734778 | 19734788 | -83 | -93 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTAAAGGC | - | 19734878 | 19734885 | -183 | -190 | |||
AtREG639 | TTAAAGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TTTAACGG | - | 19734977 | 19734984 | -282 | -289 | |||
AtREG610 | TTTAACGG | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 19731427 | AT3G53232.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCCATATAT | - | 19731457 | 19731465 | AT3G53232.1 | |
Y Patch | CTCCCTCTCTTTCTCCGTCTTCT | - | 19731394 | 19731416 | AT3G53232.1 | |
Y Patch | CTCTTTCT | - | 19731446 | 19731453 | AT3G53232.1 | |
Y Patch | CTCTCTCC | - | 19731463 | 19731470 | AT3G53232.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |