PlantPromoterDB promoter information of AT3G53300
Summary of Gene (AT3G53300)
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Overview
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Focused view (chromosome 3: 19759525-19760724)
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Genome position
from initiation codon AT3G53300.1 TSS from cDNA TSS information AT3G53300 5'->3' (+) Promoter sequence AT3G53294.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G53300
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 2 | + | 19760469 | -56 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 19760470 | -55 |
| TSS clone | A | clone | + | 19760479 | -46 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TGCCTATATATATC | + | 19760431 | 19760444 | -94 | -81 |
| Y Patch | TCCTCTCTC | + | 19760443 | 19760451 | -82 | -74 |
| Y Patch | CTCTCCTC | + | 19760471 | 19760478 | -54 | -47 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTTGG | + | 19760249 | 19760256 | -276 | -269 | |||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACGTGTCT | + | 19760283 | 19760290 | -242 | -235 | |||
| AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||