PlantPromoterDB promoter information of AT3G53750.1

Summary of Gene (AT3G53750.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G53750 TAIR NCBI
Gene model	AT3G53750.1
Description	Member of the Actin gene family. Expressed in mature pollen.

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Overview

Focused view (chromosome 3: 19914924-19916123)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G53750.1 5'->3' (+) Promoter sequence AT3G53740.1 AT3G53740.2 AT3G53740.3 AT3G53740.4 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G53750.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 19915321 -603

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	19915321	-603

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 19915318 -606

TSS clone T clone + 19915322 -602

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	19915318	-606
TSS clone	`T`	clone	+	19915322	-602

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTTC + 19915354 19915361 -570 -563

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTTC`	+	19915354	19915361	-570	-563
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTTTGGGCTTTTATTGGGCCTTAT + 19915055 19915078 -869 -846

AtREG474 GTTTGGGC                 PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT                PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT             PPDB Motif GCCCA PLACE Motif

AtREG549      GGCTTTTA            PPDB Motif PLACE Motif

AtREG417           TTATTGGG       PPDB Motif GCCCA PLACE Motif

AtREG355            TATTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG352             ATTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356              TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353               TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351                GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425                 GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG CTTAACCG + 19915164 19915171 -760 -753

AtREG605 CTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CGTCATTT + 19915217 19915224 -707 -700

AtREG657 CGTCATTT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTTTGGGCTTTTATTGGGCCTTAT`		+	19915055	19915078	-869	-846
	AtREG474	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG409	`GGGCTTTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG549	`GGCTTTTA`		PPDB Motif		PLACE Motif
	AtREG417	`TTATTGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG355	`TATTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG352	`ATTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG353	`TGGGCCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG425	`GGCCTTAT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CTTAACCG`		+	19915164	19915171	-760	-753
	AtREG605	`CTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`CGTCATTT`		+	19915217	19915224	-707	-700
	AtREG657	`CGTCATTT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 - 19914992 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS peak G 8 - 19914977 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	-	19914992	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
TSS peak	`G`	8	-	19914977	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 19914992 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS clone T clone - 19914991 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS clone C clone - 19914989 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS clone T clone - 19914988 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

TSS clone T clone - 19914980 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	19914992	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
TSS clone	`T`	clone	-	19914991	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
TSS clone	`C`	clone	-	19914989	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
TSS clone	`T`	clone	-	19914988	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
TSS clone	`T`	clone	-	19914980	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box GTATATATACA - 19915014 19915024 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`GTATATATACA`	-	19915014	19915024	AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATAAGGCCCAATAAAAGCCCAAAC - 19915055 19915078 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

AtREG425 ATAAGGCC                 PPDB Motif AACCG(G/A) PLACE Motif

AtREG351 TAAGGCCC                PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA               PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG355      GCCCAATA            PPDB Motif GCCCA PLACE Motif

AtREG417       CCCAATAA           PPDB Motif GCCCA PLACE Motif

AtREG549            TAAAAGCC      PPDB Motif PLACE Motif

AtREG409             AAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376              AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407               AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469                AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG474                 GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG CGGTTAAG - 19915164 19915171 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

AtREG605 CGGTTAAG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG AAATGACG - 19915217 19915224 AT3G53740.1, AT3G53740.2, AT3G53740.3, AT3G53740.4

AtREG657 AAATGACG PPDB Motif PLACE Motif