Summary of Gene (AT3G54110.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G54110.1 5'->3' (+) Promoter sequence AT3G54100.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | + | 20038716 | -174 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 20038680 | -210 |
TSS clone | A | clone | + | 20038709 | -181 |
TSS clone | T | clone | + | 20038710 | -180 |
TSS clone | T | clone | + | 20038715 | -175 |
TSS clone | G | clone | + | 20038717 | -173 |
TSS clone | C | clone | + | 20038718 | -172 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGTGTATAAATA | + | 20038674 | 20038685 | -216 | -205 |
Y Patch | CTCCTTTC | + | 20038699 | 20038706 | -191 | -184 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACACGTG | + | 20038668 | 20038675 | -222 | -215 | |||
AtREG460 | CACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | - | 20037952 | AT3G54100.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCCT | - | 20037914 | 20037923 | AT3G54100.1 | |
Y Patch | CCCTCTCTCTTCTTTCTCT | - | 20037925 | 20037943 | AT3G54100.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGTGACA | - | 20038161 | 20038168 | AT3G54100.1 | ||||
AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |