Summary of Gene (AT3G54140)
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Overview |
Genome position
from initiation codon AT3G54140.1 TSS from cDNA TSS information AT3G54140 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | - | 20048533 | -379 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 20048572 | -418 |
TSS clone | A | clone | - | 20048571 | -417 |
TSS clone | A | clone | - | 20048561 | -407 |
TSS clone | T | clone | - | 20048560 | -406 |
TSS clone | A | clone | - | 20048558 | -404 |
TSS clone | A | clone | - | 20048532 | -378 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCTTCTT | - | 20048489 | 20048498 | -335 | -344 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AATAGGCCT | - | 20048694 | 20048702 | -540 | -548 | |||
AtREG424 | AATAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG649 | ATAGGCCT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |