PlantPromoterDB promoter information of AT3G54890
Summary of Gene (AT3G54890)
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Overview
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Focused view (chromosome 3: 20341922-20340723)
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Genome position
from initiation codon AT3G54890.2 AT3G54890.3 AT3G54890.4 AT3G54900.1 TSS from cDNA TSS information AT3G54890 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G54890
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 661 | - | 20340988 | -66 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 20341038 | -116 |
| TSS clone | T | clone | - | 20341035 | -113 |
| TSS clone | C | clone | - | 20340990 | -68 |
| TSS clone | C | clone | - | 20340989 | -67 |
| TSS clone | A | clone | - | 20340988 | -66 |
| TSS clone | C | clone | - | 20340987 | -65 |
| TSS clone | A | clone | - | 20340985 | -63 |
| TSS clone | A | clone | - | 20340984 | -62 |
| TSS clone | A | clone | - | 20340983 | -61 |
| TSS clone | C | clone | - | 20340980 | -58 |
| TSS clone | G | clone | - | 20340954 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCTCC | - | 20340959 | 20340967 | -37 | -45 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGACACGTGGCCCAATGAAAAAGCCACG | - | 20341078 | 20341105 | -156 | -183 | |||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG382 | ACACGTGG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| AtREG445 | GTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GCCAC, GGGCC, TGGGCY | ||||
| AtREG420 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG352 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG461 | GCCCAATG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG608 | AAGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||