PlantPromoterDB promoter information of AT3G54900.1
Summary of Gene (AT3G54900.1)
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Overview
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Focused view (chromosome 3: 20343371-20342172)
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Genome position
from initiation codon AT3G54910.2 AT3G54910.3 TSS from cDNA TSS information AT3G54900.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G54900.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 21 | - | 20342391 | -20 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 20342391 | -20 |
| TSS clone | A | clone | - | 20342390 | -19 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCAAACCGAACCGGAA | - | 20342539 | 20342554 | -168 | -183 | |||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | GAACCGGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAAACCGAA | - | 20342625 | 20342634 | -254 | -263 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||