PlantPromoterDB promoter information of AT3G56800.1
Summary of Gene (AT3G56800.1)
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Overview
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Focused view (chromosome 3: 21036920-21035721)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G56800.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G56800.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 85 | - | 21036026 | -106 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 21036074 | -154 |
| TSS clone | A | clone | - | 21036073 | -153 |
| TSS clone | A | clone | - | 21036071 | -151 |
| TSS clone | A | clone | - | 21036026 | -106 |
| TSS clone | G | clone | - | 21036025 | -105 |
| TSS clone | A | clone | - | 21036010 | -90 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTTCTTCTTCTTCTTTCTC | - | 21035985 | 21036007 | -65 | -87 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCGGGTCGG | - | 21036088 | 21036097 | -168 | -177 | |||
| AtREG593 | CCCGGGTC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG494 | CCGGGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG375 | CGGGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | AACCCGGT | - | 21036126 | 21036133 | -206 | -213 | |||
| AtREG516 | AACCCGGT | PPDB Motif | PLACE Motif | ||||||
| REG | GGCGTTTTA | - | 21036211 | 21036219 | -291 | -299 | |||
| AtREG650 | GGCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CCGCGTGAACGTGTGA | - | 21036240 | 21036255 | -320 | -335 | |||
| AtREG502 | CCGCGTGA | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG631 | CGCGTGAA | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | GCTGACGTGACA | - | 21036281 | 21036292 | -361 | -372 | |||
| AtREG515 | GCTGACGT | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| AtREG440 | CTGACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG606 | ACGTGACA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||