PlantPromoterDB promoter information of AT3G57230.2
Summary of Gene (AT3G57230.2)
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Overview
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Focused view (chromosome 3: 21174110-21175309)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G57230.2 5'->3' (+) Promoter sequence AT3G57210.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G57230.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 21177451 | -259 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCCT | + | 21177442 | 21177449 | -268 | -261 |
| Y Patch | CTCTCTCTTCTCTTTCTCTTTCTCTTTCCT | + | 21177457 | 21177486 | -253 | -224 |
| Y Patch | TCTCTTTC | + | 21177490 | 21177497 | -220 | -213 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 21174410 | AT3G57220.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 21174456 | AT3G57220.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTTTGGGCCTTTT | + | 21174353 | 21174365 | AT3G57220.1 | ||||
| AtREG529 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG373 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG359 | GGGCCTTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||