Summary of Gene (AT3G57230.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G57230.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 21177451 | -259 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCCT | + | 21177442 | 21177449 | -268 | -261 |
Y Patch | CTCTCTCTTCTCTTTCTCTTTCTCTTTCCT | + | 21177457 | 21177486 | -253 | -224 |
Y Patch | TCTCTTTC | + | 21177490 | 21177497 | -220 | -213 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 21174410 | AT3G57220.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 21174456 | AT3G57220.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTTTGGGCCTTTT | + | 21174353 | 21174365 | AT3G57220.1 | ||||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG359 | GGGCCTTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   |