PlantPromoterDB promoter information of AT3G57940.1

Summary of Gene (AT3G57940.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G57940 TAIR NCBI
Gene model	AT3G57940.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Region of unknown function DUF1726 (InterPro:IPR013562), Protein of unknown function DUF699, ATPase putative (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10490.1); Has 915 Blast hits to 873 proteins in 391 species: Archae - 82; Bacteria - 412; Metazoa - 163; Fungi - 92; Plants - 21; Viruses - 3; Other Eukaryotes - 142 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 21448560-21449759)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G57940.1 5'->3' (+) Promoter sequence AT3G57930.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G57940.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone + 21449298 -262

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	+	21449298	-262

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCTT + 21449145 21449153 -415 -407

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCTT`	+	21449145	21449153	-415	-407
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GTTTGGGCTTTGGCCCATTAG + 21448896 21448916 -664 -644

AtREG474 GTTTGGGC              PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG559     GGGCTTTG          PPDB Motif GCCCA PLACE Motif

AtREG484          TTGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490           TGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361            GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357             GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG558              CCCATTAG PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GTTTGGGCTTTGGCCCATTAG`		+	21448896	21448916	-664	-644
	AtREG474	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG484	`TTGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`TGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG558	`CCCATTAG`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 - 21448649 AT3G57930.1, AT3G57930.2

TSS peak A 4 - 21448620 AT3G57930.1, AT3G57930.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	-	21448649	AT3G57930.1, AT3G57930.2
TSS peak	`A`	4	-	21448620	AT3G57930.1, AT3G57930.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 21448619 AT3G57930.1, AT3G57930.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	21448619	AT3G57930.1, AT3G57930.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GGCGCGTG - 21448750 21448757 AT3G57930.1, AT3G57930.2

AtREG486 GGCGCGTG PPDB Motif ACGCGC PLACE Motif

REG CACGCGCC - 21448766 21448773 AT3G57930.1, AT3G57930.2

AtREG486 CACGCGCC PPDB Motif ACGCGC PLACE Motif

REG AACCGAACC - 21448806 21448814 AT3G57930.1, AT3G57930.2

AtREG556 AACCGAAC PPDB Motif AACCG(G/A) PLACE Motif

AtREG451 ACCGAACC PPDB Motif PLACE Motif

REG CTAATGGGCCAAAGCCCAAAC - 21448896 21448916 AT3G57930.1, AT3G57930.2

AtREG558 CTAATGGG              PPDB Motif GCCCA PLACE Motif

AtREG357 TAATGGGC             PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490    ATGGGCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484     TGGGCCAA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG559          CAAAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG376           AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469             AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG474              GCCCAAAC PPDB Motif GCCCA PLACE Motif