PlantPromoterDB promoter information of AT3G58670.2

Summary of Gene (AT3G58670.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G58670 TAIR NCBI
Gene model	AT3G58670.2
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42670.1); Has 238 Blast hits to 238 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 21708214-21707015)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G58670.2 5'->3' (-) Promoter sequence AT3G58680.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G58670.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 21706079 -765

TSS clone peak C clone - 21706055 -741

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	21706079	-765
TSS clone peak	`C`	clone	-	21706055	-741

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 28 + 21707276 AT3G58680.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	28	+	21707276	AT3G58680.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 21707276 AT3G58680.1

TSS clone T clone + 21707277 AT3G58680.1

TSS clone T clone + 21707285 AT3G58680.1

TSS clone T clone + 21707306 AT3G58680.1

TSS clone T clone + 21707309 AT3G58680.1

TSS clone A clone + 21707334 AT3G58680.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	21707276	AT3G58680.1
TSS clone	`T`	clone	+	21707277	AT3G58680.1
TSS clone	`T`	clone	+	21707285	AT3G58680.1
TSS clone	`T`	clone	+	21707306	AT3G58680.1
TSS clone	`T`	clone	+	21707309	AT3G58680.1
TSS clone	`A`	clone	+	21707334	AT3G58680.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box AATATAAAAT + 21707242 21707251 AT3G58680.1

Y Patch TCTCTCTCTCAT + 21707285 21707296 AT3G58680.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`AATATAAAAT`	+	21707242	21707251	AT3G58680.1
Y Patch	`TCTCTCTCTCAT`	+	21707285	21707296	AT3G58680.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ATTTGGGCCAA + 21707099 21707109 AT3G58680.1

AtREG421 ATTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420   TTGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG GATGGGCCCT + 21707186 21707195 AT3G58680.1

AtREG403 GATGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG391 ATGGGCCC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG400   TGGGCCCT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY