Summary of Gene (AT3G58670.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G58670.2 5'->3' (-) Promoter sequence AT3G58690.1
AT3G58700.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 21706079 | -765 |
TSS clone peak | C | clone | - | 21706055 | -741 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | + | 21711578 | AT3G58700.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 21711570 | AT3G58700.1 |
TSS clone | T | clone | + | 21711607 | AT3G58700.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTT | + | 21711600 | 21711608 | AT3G58700.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TATGGGCTA | + | 21711384 | 21711392 | AT3G58700.1 | ||||
AtREG477 | TATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG581 | ATGGGCTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTATTGGGCCAAT | + | 21711397 | 21711409 | AT3G58700.1 | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG446 | GGGCCAAT | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
REG | GTCACGTG | + | 21711468 | 21711475 | AT3G58700.1 | ||||
AtREG583 | GTCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
REG | GTGGGCTTG | + | 21711483 | 21711491 | AT3G58700.1 | ||||
AtREG518 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG525 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | CGTCATTT | + | 21711513 | 21711520 | AT3G58700.1 | ||||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   |