PlantPromoterDB promoter information of AT3G58676.1
Summary of Gene (AT3G58676.1)
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Overview
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Focused view (chromosome 3: 21707938-21706739)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G58676.1 5'->3' (-) Promoter sequence AT3G58680.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G58676.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 28 | + | 21707276 | AT3G58680.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 21707276 | AT3G58680.1 |
| TSS clone | T | clone | + | 21707277 | AT3G58680.1 |
| TSS clone | T | clone | + | 21707285 | AT3G58680.1 |
| TSS clone | T | clone | + | 21707306 | AT3G58680.1 |
| TSS clone | T | clone | + | 21707309 | AT3G58680.1 |
| TSS clone | A | clone | + | 21707334 | AT3G58680.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATAAAAT | + | 21707242 | 21707251 | AT3G58680.1 | |
| Y Patch | TCTCTCTCTCAT | + | 21707285 | 21707296 | AT3G58680.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGACATCG | + | 21707003 | 21707010 | AT3G58680.1 | ||||
| AtREG630 | CGACATCG | PPDB Motif | PLACE Motif | ||||||
| REG | ATTTGGGCCAA | + | 21707099 | 21707109 | AT3G58680.1 | ||||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG373 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | GATGGGCCCT | + | 21707186 | 21707195 | AT3G58680.1 | ||||
| AtREG403 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG391 | ATGGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG400 | TGGGCCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||