PlantPromoterDB promoter information of AT3G58730.1
Summary of Gene (AT3G58730.1)
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Overview
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Focused view (chromosome 3: 21720280-21719081)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G58730.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G58730.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 18 | - | 21719904 | -624 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 21719980 | -700 |
| TSS clone | T | clone | - | 21719979 | -699 |
| TSS clone | T | clone | - | 21719977 | -697 |
| TSS clone | A | clone | - | 21719918 | -638 |
| TSS clone | T | clone | - | 21719913 | -633 |
| TSS clone | A | clone | - | 21719907 | -627 |
| TSS clone | A | clone | - | 21719906 | -626 |
| TSS clone | T | clone | - | 21719903 | -623 |
| TSS clone | C | clone | - | 21719902 | -622 |
| TSS clone | A | clone | - | 21719901 | -621 |
| TSS clone | A | clone | - | 21719894 | -614 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCC | - | 21719856 | 21719863 | -576 | -583 |
| Y Patch | TCTCTCTTTCTCTCTTT | - | 21719866 | 21719882 | -586 | -602 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTAGCCCATTT | - | 21719977 | 21719987 | -697 | -707 | |||
| AtREG571 | TTAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG581 | TAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||