PlantPromoterDB promoter information of AT3G59280.1
Summary of Gene (AT3G59280.1)
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Overview
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Focused view (chromosome 3: 21911519-21910320)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G59280.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G59280.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 21910670 | -151 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 21910722 | -203 |
| TSS clone | T | clone | - | 21910714 | -195 |
| TSS clone | T | clone | - | 21910676 | -157 |
| TSS clone | A | clone | - | 21910660 | -141 |
| TSS clone | A | clone | - | 21910650 | -131 |
| TSS clone | A | clone | - | 21910646 | -127 |
| TSS clone | T | clone | - | 21910622 | -103 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTTCT | - | 21910624 | 21910633 | -105 | -114 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAACGAC | - | 21910741 | 21910748 | -222 | -229 | |||
| AtREG520 | AAAACGAC | PPDB Motif | PLACE Motif | ||||||
| REG | CTATTGGG | - | 21910760 | 21910767 | -241 | -248 | |||
| AtREG624 | CTATTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CAAGCCCATAA | - | 21910786 | 21910796 | -267 | -277 | |||
| AtREG525 | CAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGATGGGCCTGA | - | 21910811 | 21910822 | -292 | -303 | |||
| AtREG572 | AGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG403 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG374 | GGGCCTGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | CAACGGTC | - | 21910844 | 21910851 | -325 | -332 | |||
| AtREG553 | CAACGGTC | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||