Summary of Gene (AT3G59310.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G59310.1 5'->3' (-) Promoter sequence AT3G59350.1
AT3G59350.2 AT3G59350.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 21924454 | -141 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 21924329 | -16 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 21932811 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 21932526 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | T | clone | + | 21932527 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | A | clone | + | 21932534 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | C | clone | + | 21932611 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | T | clone | + | 21932685 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | A | clone | + | 21932712 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
TSS clone | T | clone | + | 21932713 | AT3G59350.1, AT3G59350.2, AT3G59350.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGTCACGTGTTTCCACGT | - | 21931621 | 21931638 | AT3G59340.1 | ||||
AtREG606 | TGTCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG583 | GTCACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | ||||
AtREG628 | TCACGTGT | DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG590 | CACGTGTT | ABA, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG627 | TTCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
REG | TATAGGCCCATAA | - | 21931702 | 21931714 | AT3G59340.1 | ||||
AtREG487 | TATAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG362 | ATAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG394 | GCCCATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGCCCAATAAAGCC | - | 21931727 | 21931741 | AT3G59340.1 | ||||
AtREG533 | GAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG601 | ATAAAGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGCTTTTA | - | 21931753 | 21931760 | AT3G59340.1 | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   |