PlantPromoterDB promoter information of AT3G59350.2

Summary of Gene (AT3G59350.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G59350 TAIR NCBI
Gene model	AT3G59350.2
Description	serine/threonine protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, core (InterPro:IPR000719), Serine/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase, active site (InterPro:IPR008266), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase, putative (TAIR:AT2G43230.1); Has 79023 Blast hits to 78149 proteins in 3035 species: Archae - 48; Bacteria - 7473; Metazoa - 34844; Fungi - 5822; Plants - 17686; Viruses - 277; Other Eukaryotes - 12873 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 21930642-21931841)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G59350.2 5'->3' (+) Promoter sequence AT3G59340.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G59350.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 + 21932811 -581

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	+	21932811	-581

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 21932526 -866

TSS clone T clone + 21932527 -865

TSS clone A clone + 21932534 -858

TSS clone C clone + 21932611 -781

TSS clone T clone + 21932685 -707

TSS clone A clone + 21932712 -680

TSS clone T clone + 21932713 -679

TSS clone G clone + 21932821 -571

TSS clone C clone + 21932863 -529

TSS clone G clone + 21932870 -522

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	21932526	-866
TSS clone	`T`	clone	+	21932527	-865
TSS clone	`A`	clone	+	21932534	-858
TSS clone	`C`	clone	+	21932611	-781
TSS clone	`T`	clone	+	21932685	-707
TSS clone	`A`	clone	+	21932712	-680
TSS clone	`T`	clone	+	21932713	-679
TSS clone	`G`	clone	+	21932821	-571
TSS clone	`C`	clone	+	21932863	-529
TSS clone	`G`	clone	+	21932870	-522

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 4 - 21931550 AT3G59340.1

TSS peak A 4 - 21931034 AT3G59340.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	4	-	21931550	AT3G59340.1
TSS peak	`A`	4	-	21931034	AT3G59340.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 21931570 AT3G59340.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	21931570	AT3G59340.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCT - 21931037 21931044 AT3G59340.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCT`	-	21931037	21931044	AT3G59340.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TGTCACGTGTTTCCACGT - 21931621 21931638 AT3G59340.1

AtREG606 TGTCACGT           ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG583 GTCACGTG          PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG628   TCACGTGT         DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG590    CACGTGTT        ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG627           TTCCACGT PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TATAGGCCCATAA - 21931702 21931714 AT3G59340.1

AtREG487 TATAGGCC      PPDB Motif PLACE Motif

AtREG362 ATAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG364     GGCCCATA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG394      GCCCATAA PPDB Motif GCCCA PLACE Motif

REG GAGCCCAATAAAGCC - 21931727 21931741 AT3G59340.1

AtREG533 GAGCCCAA        PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402 AGCCCAAT       PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355   GCCCAATA      PPDB Motif GCCCA PLACE Motif

AtREG417    CCCAATAA     PPDB Motif GCCCA PLACE Motif

AtREG601        ATAAAGCC PPDB Motif PLACE Motif

REG GGCTTTTA - 21931753 21931760 AT3G59340.1

AtREG549 GGCTTTTA PPDB Motif PLACE Motif