Summary of Gene (AT3G59400)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G59400 5'->3' (-) Promoter sequence AT3G59380.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 21949705 | -27 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 21949710 | -32 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCC | - | 21949657 | 21949664 | 21 | 14 |
Y Patch | CTCTTCTCTCTCTTCCTCTCC | - | 21949683 | 21949703 | -5 | -25 |
Y Patch | TCTCTTCTTCTT | - | 21949744 | 21949755 | -66 | -77 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAATGACG | - | 21949976 | 21949983 | -298 | -305 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 21944197 | AT3G59380.1 |
TSS clone peak | G | clone | + | 21944203 | AT3G59380.1 |
TSS clone | A | clone | + | 21944206 | AT3G59380.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAAAGCC | + | 21943656 | 21943663 | AT3G59380.1 | ||||
AtREG545 | TTAAAGCC | PPDB Motif |   | PLACE Motif |   |