Summary of Gene (AT3G61070.2)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G61070.2 5'->3' (-) Promoter sequence AT3G61080.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 2 | - | 22606677 | -518 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 22606766 | -607 |
TSS clone | A | clone | - | 22606712 | -553 |
TSS clone | C | clone | - | 22606685 | -526 |
TSS clone | T | clone | - | 22606642 | -483 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGACGT | - | 22606824 | 22606833 | -665 | -674 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
REG | ACACGCGC | - | 22606912 | 22606919 | -753 | -760 | |||
AtREG385 | ACACGCGC | PPDB Motif | ACGCGC  | PLACE Motif | ACACNNG  | ||||
REG | AAACGCTGCGTTTTA | - | 22606951 | 22606965 | -792 | -806 | |||
AtREG626 | AAACGCTG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG369 | ACGCTGCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG564 | GCGTTTTA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 22607139 | AT3G61080.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |