PlantPromoterDB promoter information of AT3G61280.2

Summary of Gene (AT3G61280.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G61280 TAIR NCBI
Gene model	AT3G61280.2
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61290.1); Has 467 Blast hits to 463 proteins in 98 species: Archae - 0; Bacteria - 38; Metazoa - 201; Fungi - 82; Plants - 115; Viruses - 4; Other Eukaryotes - 27 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 22675795-22676994)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G61280.2 5'->3' (+) Promoter sequence AT3G61260.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G61280.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak T clone + 22680965 -180

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`T`	clone	+	22680965	-180

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 18 - 22676779 AT3G61260.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	18	-	22676779	AT3G61260.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 22676787 AT3G61260.1

TSS clone A clone - 22676781 AT3G61260.1

TSS clone T clone - 22676780 AT3G61260.1

TSS clone A clone - 22676779 AT3G61260.1

TSS clone T clone - 22676778 AT3G61260.1

TSS clone T clone - 22676762 AT3G61260.1

TSS clone A clone - 22676751 AT3G61260.1

TSS clone G clone - 22676746 AT3G61260.1

TSS clone C clone - 22676720 AT3G61260.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	22676787	AT3G61260.1
TSS clone	`A`	clone	-	22676781	AT3G61260.1
TSS clone	`T`	clone	-	22676780	AT3G61260.1
TSS clone	`A`	clone	-	22676779	AT3G61260.1
TSS clone	`T`	clone	-	22676778	AT3G61260.1
TSS clone	`T`	clone	-	22676762	AT3G61260.1
TSS clone	`A`	clone	-	22676751	AT3G61260.1
TSS clone	`G`	clone	-	22676746	AT3G61260.1
TSS clone	`C`	clone	-	22676720	AT3G61260.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TATAAACA - 22676803 22676810 AT3G61260.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATAAACA`	-	22676803	22676810	AT3G61260.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AAAACGCG - 22676820 22676827 AT3G61260.1

AtREG566 AAAACGCG PPDB Motif AAACG(C/G) PLACE Motif

REG CACGTGGAT - 22676911 22676919 AT3G61260.1

AtREG408 CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG547 ACGTGGAT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG TTTAACCG - 22676972 22676979 AT3G61260.1

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TACGTGGCAT - 22676983 22676992 AT3G61260.1

AtREG413 TACGTGGC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG379 ACGTGGCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG448 CGTGGCAT ABA, DREB1Aox PPDB Motif PLACE Motif GCCAC