Summary of Gene (AT3G61280.2)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G61280.2 5'->3' (+) Promoter sequence AT3G61260.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 22680965 | -180 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 18 | - | 22676779 | AT3G61260.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 22676787 | AT3G61260.1 |
TSS clone | A | clone | - | 22676781 | AT3G61260.1 |
TSS clone | T | clone | - | 22676780 | AT3G61260.1 |
TSS clone | A | clone | - | 22676779 | AT3G61260.1 |
TSS clone | T | clone | - | 22676778 | AT3G61260.1 |
TSS clone | T | clone | - | 22676762 | AT3G61260.1 |
TSS clone | A | clone | - | 22676751 | AT3G61260.1 |
TSS clone | G | clone | - | 22676746 | AT3G61260.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATAAACA | - | 22676803 | 22676810 | AT3G61260.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAACGCG | - | 22676820 | 22676827 | AT3G61260.1 | ||||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | CACGTGGAT | - | 22676911 | 22676919 | AT3G61260.1 | ||||
AtREG408 | CACGTGGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG547 | ACGTGGAT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | TTTAACCG | - | 22676972 | 22676979 | AT3G61260.1 | ||||
AtREG645 | TTTAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | TACGTGGCAT | - | 22676983 | 22676992 | AT3G61260.1 | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | CCACGTCACG | - | 22677061 | 22677070 | AT3G61260.1 | ||||
AtREG419 | CCACGTCA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG466 | CACGTCAC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG489 | ACGTCACG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT  |