Summary of Gene (AT3G61430.1)
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Overview |
Genome position
from initiation codon AT3G61440.2 TSS from cDNA TSS information AT3G61430.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 589 | + | 22733590 | -67 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 22733548 | -109 |
TSS clone | A | clone | + | 22733585 | -72 |
TSS clone | C | clone | + | 22733589 | -68 |
TSS clone | A | clone | + | 22733590 | -67 |
TSS clone | C | clone | + | 22733591 | -66 |
TSS clone | C | clone | + | 22733593 | -64 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ACTATATAAT | + | 22733555 | 22733564 | -102 | -93 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGTTAAA | + | 22733401 | 22733408 | -256 | -249 | |||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 46 | + | 22735810 | AT3G61440.1, AT3G61440.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 22735787 | AT3G61440.1, AT3G61440.2 |
TSS clone | T | clone | + | 22735788 | AT3G61440.1, AT3G61440.2 |
TSS clone | A | clone | + | 22735811 | AT3G61440.1, AT3G61440.2 |
TSS clone | C | clone | + | 22735815 | AT3G61440.1, AT3G61440.2 |
TSS clone | C | clone | + | 22735838 | AT3G61440.1, AT3G61440.2 |
TSS clone | T | clone | + | 22735870 | AT3G61440.1, AT3G61440.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCTCC | + | 22735791 | 22735801 | AT3G61440.1, AT3G61440.2 | |
Y Patch | CTCCTCCTCT | + | 22735815 | 22735824 | AT3G61440.1, AT3G61440.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |