PlantPromoterDB promoter information of AT3G61430.1
Summary of Gene (AT3G61430.1)
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Overview
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Focused view (chromosome 3: 22745557-22746756)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G61430.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G61430.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 589 | + | 22733590 | -67 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 22733548 | -109 |
| TSS clone | A | clone | + | 22733585 | -72 |
| TSS clone | C | clone | + | 22733589 | -68 |
| TSS clone | A | clone | + | 22733590 | -67 |
| TSS clone | C | clone | + | 22733591 | -66 |
| TSS clone | C | clone | + | 22733593 | -64 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACTATATAAT | + | 22733555 | 22733564 | -102 | -93 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTAAA | + | 22733401 | 22733408 | -256 | -249 | |||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | T | 170 | + | 22745718 | AT3G61470.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | C | clone | + | 22745653 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745657 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745659 | AT3G61470.1 |
| TSS clone | C | clone | + | 22745668 | AT3G61470.1 |
| TSS clone | A | clone | + | 22745669 | AT3G61470.1 |
| TSS clone | C | clone | + | 22745688 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745689 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745692 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745695 | AT3G61470.1 |
| TSS clone | A | clone | + | 22745696 | AT3G61470.1 |
| TSS clone | A | clone | + | 22745697 | AT3G61470.1 |
| TSS clone | C | clone | + | 22745700 | AT3G61470.1 |
| TSS clone | C | clone | + | 22745702 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745705 | AT3G61470.1 |
| TSS clone | T | clone | + | 22745727 | AT3G61470.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTTCT | + | 22745684 | 22745695 | AT3G61470.1 | |
| Y Patch | CTTCTTCT | + | 22745755 | 22745762 | AT3G61470.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TTGCCACGTG | + | 22745559 | 22745568 | AT3G61470.1 | ||||
| AtREG452 | TTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||