PlantPromoterDB promoter information of AT3G61440.1
Summary of Gene (AT3G61440.1)
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Overview
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Focused view (chromosome 3: 22734885-22736084)
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Genome position
from initiation codon AT3G61430.2 AT3G61440.2 TSS from cDNA TSS information AT3G61440.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G61440.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 46 | + | 22735810 | -75 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 22735787 | -98 |
| TSS clone | T | clone | + | 22735788 | -97 |
| TSS clone | A | clone | + | 22735811 | -74 |
| TSS clone | C | clone | + | 22735815 | -70 |
| TSS clone | C | clone | + | 22735838 | -47 |
| TSS clone | T | clone | + | 22735870 | -15 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTCC | + | 22735791 | 22735801 | -94 | -84 |
| Y Patch | CTCCTCCTCT | + | 22735815 | 22735824 | -70 | -61 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||