PlantPromoterDB promoter information of AT3G61470
Summary of Gene (AT3G61470)
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Overview
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Focused view (chromosome 3: 22744736-22745935)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G61470 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G61470
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 170 | + | 22745718 | -18 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 22745653 | -83 |
| TSS clone | T | clone | + | 22745657 | -79 |
| TSS clone | T | clone | + | 22745659 | -77 |
| TSS clone | C | clone | + | 22745668 | -68 |
| TSS clone | A | clone | + | 22745669 | -67 |
| TSS clone | C | clone | + | 22745688 | -48 |
| TSS clone | T | clone | + | 22745689 | -47 |
| TSS clone | T | clone | + | 22745692 | -44 |
| TSS clone | T | clone | + | 22745695 | -41 |
| TSS clone | A | clone | + | 22745696 | -40 |
| TSS clone | A | clone | + | 22745697 | -39 |
| TSS clone | C | clone | + | 22745700 | -36 |
| TSS clone | C | clone | + | 22745702 | -34 |
| TSS clone | T | clone | + | 22745705 | -31 |
| TSS clone | T | clone | + | 22745727 | -9 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTTCTTCT | + | 22745684 | 22745695 | -52 | -41 |
| Y Patch | CTTCTTCT | + | 22745755 | 22745762 | 19 | 26 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAAGCCCAAAA | + | 22745419 | 22745431 | -317 | -305 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| AtREG409 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG407 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG469 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG529 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATATGGGCTTTG | + | 22745434 | 22745445 | -302 | -291 | |||
| AtREG432 | ATATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG477 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG559 | GGGCTTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATAAGCCCA | + | 22745455 | 22745463 | -281 | -273 | |||
| AtREG462 | ATAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG426 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | TTGCCACGTG | + | 22745559 | 22745568 | -177 | -168 | |||
| AtREG452 | TTGCCACG | PPDB Motif | PLACE Motif | GCCAC | |||||
| AtREG379 | TGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG367 | GCCACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||