Summary of Gene (AT3G62190.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G62190.1 5'->3' (+) Promoter sequence AT3G62180.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 23021039 | -107 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 23021040 | -106 |
TSS clone | A | clone | + | 23021092 | -54 |
TSS clone | G | clone | + | 23021121 | -25 |
TSS clone | T | clone | + | 23021122 | -24 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | ACTATATATT | + | 23021004 | 23021013 | -142 | -133 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 2 | - | 23020529 | AT3G62180.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCC | - | 23020500 | 23020507 | AT3G62180.1 | |
Y Patch | CCTCTCTTCTTCCTC | - | 23020531 | 23020545 | AT3G62180.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |