PlantPromoterDB promoter information of AT3G62870
Summary of Gene (AT3G62870)
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Overview
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Focused view (chromosome 3: 23245273-23244074)
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Genome position
from initiation codon AT3G62880.1 AT3G62880.2 TSS from cDNA TSS information AT3G62870 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G62870
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 23244326 | -53 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 23244347 | -74 |
| TSS clone | G | clone | - | 23244346 | -73 |
| TSS clone | G | clone | - | 23244324 | -51 |
| TSS clone | T | clone | - | 23244323 | -50 |
| TSS clone | G | clone | - | 23244321 | -48 |
| TSS clone | C | clone | - | 23244320 | -47 |
| TSS clone | T | clone | - | 23244319 | -46 |
| TSS clone | G | clone | - | 23244315 | -42 |
| TSS clone | C | clone | - | 23244314 | -41 |
| TSS clone | A | clone | - | 23244309 | -36 |
| TSS clone | G | clone | - | 23244308 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTTTATAAATA | - | 23244347 | 23244358 | -74 | -85 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATTTGGGC | - | 23244366 | 23244373 | -93 | -100 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGGGCTTC | - | 23244397 | 23244404 | -124 | -131 | |||
| AtREG476 | TGGGCTTC | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | TACGTGTCC | - | 23244425 | 23244433 | -152 | -160 | |||
| AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||