PlantPromoterDB promoter information of AT3G62980.1
Summary of Gene (AT3G62980.1)
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Overview
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Focused view (chromosome 3: 23277181-23275982)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G62980.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G62980.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 5 | - | 23276357 | -176 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 23276391 | -210 |
| TSS clone | T | clone | - | 23276386 | -205 |
| TSS clone | T | clone | - | 23276384 | -203 |
| TSS clone | T | clone | - | 23276379 | -198 |
| TSS clone | T | clone | - | 23276360 | -179 |
| TSS clone | T | clone | - | 23276358 | -177 |
| TSS clone | A | clone | - | 23276357 | -176 |
| TSS clone | T | clone | - | 23276356 | -175 |
| TSS clone | T | clone | - | 23276352 | -171 |
| TSS clone | T | clone | - | 23276343 | -162 |
| TSS clone | A | clone | - | 23276320 | -139 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCCT | - | 23276324 | 23276331 | -143 | -150 |
| Y Patch | TCTTCTTC | - | 23276345 | 23276352 | -164 | -171 |
| Y Patch | CTCTCTCTCTCTCTCT | - | 23276358 | 23276373 | -177 | -192 |
| Y Patch | TTCTCTTCTCTTCC | - | 23276376 | 23276389 | -195 | -208 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCTTTTT | - | 23276423 | 23276430 | -242 | -249 | |||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | AGACACGTGTCAT | - | 23276513 | 23276525 | -332 | -344 | |||
| AtREG470 | AGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
| REG | TCGGACGG | - | 23276545 | 23276552 | -364 | -371 | |||
| AtREG594 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||