PlantPromoterDB promoter information of AT3G63010.1
Summary of Gene (AT3G63010.1)
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Overview
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Focused view (chromosome 3: 23288717-23289916)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G63010.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G63010.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 2 | + | 23289488 | -229 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 23289425 | -292 |
| TSS clone | T | clone | + | 23289426 | -291 |
| TSS clone | T | clone | + | 23289427 | -290 |
| TSS clone | T | clone | + | 23289570 | -147 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTCTCTCTC | + | 23289439 | 23289454 | -278 | -263 |
| Y Patch | CTCTCTCTCTCTCTC | + | 23289463 | 23289477 | -254 | -240 |
| Y Patch | TCTTTCTCC | + | 23289513 | 23289521 | -204 | -196 |
| Y Patch | CTCTCTCTCTTT | + | 23289524 | 23289535 | -193 | -182 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGACCCAC | + | 23289349 | 23289359 | -368 | -358 | |||
| AtREG406 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG596 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG615 | GGGACCCA | ABA | PPDB Motif | GGGACCC | PLACE Motif | ||||
| AtREG523 | GGACCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CCGTCCGA | + | 23289404 | 23289411 | -313 | -306 | |||
| AtREG594 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||