PlantPromoterDB promoter information of AT3G63140
Summary of Gene (AT3G63140)
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Overview
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Focused view (chromosome 3: 23329620-23328421)
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Genome position
from initiation codon AT3G63150.1 TSS from cDNA TSS information AT3G63140 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G63140
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 23328648 | -28 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 23328713 | -93 |
| TSS clone | T | clone | - | 23328684 | -64 |
| TSS clone | G | clone | - | 23328647 | -27 |
| TSS clone | T | clone | - | 23328633 | -13 |
| TSS clone | A | clone | - | 23328628 | -8 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACCGTTGGAT | - | 23328721 | 23328731 | -101 | -111 | |||
| AtREG553 | GACCGTTG | Auxin | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | |||
| AtREG554 | CCGTTGGA | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| AtREG586 | CGTTGGAT | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | ATTTGGGCCAAT | - | 23328774 | 23328785 | -154 | -165 | |||
| AtREG421 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG373 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG420 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG484 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG446 | GGGCCAAT | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC | |||
| REG | TAAATGGGCCCATTT | - | 23328792 | 23328806 | -172 | -186 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG386 | AAATGGGCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG391 | ATGGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG422 | TGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | TAAACGACG | - | 23328834 | 23328842 | -214 | -222 | |||
| AtREG565 | TAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||