PlantPromoterDB promoter information of AT3G63160

Summary of Gene (AT3G63160)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G63160 TAIR NCBI
Gene model	AT3G63160
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 23334982-23333783)

`Genome position from initiation codon` `AT3G63160.1 TSS from cDNA TSS information AT3G63160 5'->3' (-) Promoter sequence AT3G63170.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G63160

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 59 - 23334034 -52

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	59	-	23334034	-52

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 23334088 -106

TSS clone T clone - 23334086 -104

TSS clone G clone - 23334059 -77

TSS clone A clone - 23334049 -67

TSS clone G clone - 23334044 -62

TSS clone A clone - 23334036 -54

TSS clone C clone - 23334035 -53

TSS clone T clone - 23334028 -46

TSS clone T clone - 23334026 -44

TSS clone A clone - 23334022 -40

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	23334088	-106
TSS clone	`T`	clone	-	23334086	-104
TSS clone	`G`	clone	-	23334059	-77
TSS clone	`A`	clone	-	23334049	-67
TSS clone	`G`	clone	-	23334044	-62
TSS clone	`A`	clone	-	23334036	-54
TSS clone	`C`	clone	-	23334035	-53
TSS clone	`T`	clone	-	23334028	-46
TSS clone	`T`	clone	-	23334026	-44
TSS clone	`A`	clone	-	23334022	-40

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TCAGCCCATATTAGGCCCAAAT - 23334172 23334193 -190 -211

AtREG609 TCAGCCCA               PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477   AGCCCATA             PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG432    GCCCATAT            PPDB Motif GCCCA PLACE Motif

AtREG506          ATTAGGCC      PPDB Motif PLACE Motif

AtREG360           TTAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358            TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356             AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373              GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG421               GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG ACGACACC - 23334223 23334230 -241 -248

AtREG599 ACGACACC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TCAGCCCATATTAGGCCCAAAT`		-	23334172	23334193	-190	-211
	AtREG609	`TCAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG477	`AGCCCATA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG432	`GCCCATAT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG506	`ATTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG421	`GCCCAAAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACGACACC`		-	23334223	23334230	-241	-248
	AtREG599	`ACGACACC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 + 23334623 AT3G63170.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	+	23334623	AT3G63170.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 23334599 AT3G63170.1

TSS clone G clone + 23334614 AT3G63170.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	23334599	AT3G63170.1
TSS clone	`G`	clone	+	23334614	AT3G63170.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCCAATAT + 23334379 23334386 AT3G63170.1

AtREG509 CCCAATAT PPDB Motif PLACE Motif

REG GGGCCTTT + 23334412 23334419 AT3G63170.1

AtREG359 GGGCCTTT PPDB Motif GCCCA PLACE Motif GGGCC

REG AAAGCCCAAAT + 23334438 23334448 AT3G63170.1

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469   AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421    GCCCAAAT PPDB Motif GCCCA PLACE Motif

REG AAAGCCCAAAC + 23334477 23334487 AT3G63170.1

AtREG376 AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG469   AGCCCAAA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG474    GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG GTCACGTG + 23334511 23334518 AT3G63170.1

AtREG583 GTCACGTG PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

REG TACACGTGTCA + 23334522 23334532 AT3G63170.1

AtREG453 TACACGTG    ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

AtREG366   CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG389    ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC