Summary of Gene (AT3G63410)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G63410 5'->3' (-) Promoter sequence AT3G63420.1
AT3G63420.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 13 | - | 23417045 | -43 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 23417119 | -117 |
TSS clone | G | clone | - | 23417118 | -116 |
TSS clone | T | clone | - | 23417117 | -115 |
TSS clone | C | clone | - | 23417095 | -93 |
TSS clone | T | clone | - | 23417081 | -79 |
TSS clone | T | clone | - | 23417077 | -75 |
TSS clone | G | clone | - | 23417066 | -64 |
TSS clone | G | clone | - | 23417065 | -63 |
TSS clone | G | clone | - | 23417054 | -52 |
TSS clone | A | clone | - | 23417044 | -42 |
TSS clone | A | clone | - | 23417022 | -20 |
TSS clone | G | clone | - | 23417018 | -16 |
TSS clone | G | clone | - | 23417017 | -15 |
TSS clone | G | clone | - | 23417014 | -12 |
TSS clone | T | clone | - | 23417005 | -3 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCTTCTTCCCTCTTCTC | - | 23417024 | 23417042 | -22 | -40 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGAGCCCATGGGCTCA | - | 23417193 | 23417208 | -191 | -206 | |||
AtREG485 | TGAGCCCATGGGCTCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG591 | CCCATGGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
AtREG507 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | ATTTGGGCCAAT | - | 23417218 | 23417229 | -216 | -227 | |||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG446 | GGGCCAAT | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
REG | CAAAACGCCCAATA | - | 23417235 | 23417248 | -233 | -246 | |||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
AtREG650 | AAAACGCC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 23417313 | AT3G63420.1, AT3G63420.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |