PlantPromoterDB promoter information of AT3G63410

Summary of Gene (AT3G63410)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G63410 TAIR NCBI
Gene model	AT3G63410
Description	Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.

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Overview

Focused view (chromosome 3: 23418002-23416803)

`Genome position from initiation codon` `AT3G63410.1 TSS from cDNA TSS information AT3G63410 5'->3' (-) Promoter sequence AT3G63420.1 AT3G63420.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G63410

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 13 - 23417045 -43

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	13	-	23417045	-43

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 23417119 -117

TSS clone G clone - 23417118 -116

TSS clone T clone - 23417117 -115

TSS clone C clone - 23417095 -93

TSS clone T clone - 23417081 -79

TSS clone T clone - 23417077 -75

TSS clone G clone - 23417066 -64

TSS clone G clone - 23417065 -63

TSS clone G clone - 23417054 -52

TSS clone A clone - 23417044 -42

TSS clone A clone - 23417022 -20

TSS clone G clone - 23417018 -16

TSS clone G clone - 23417017 -15

TSS clone G clone - 23417014 -12

TSS clone T clone - 23417005 -3

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	23417119	-117
TSS clone	`G`	clone	-	23417118	-116
TSS clone	`T`	clone	-	23417117	-115
TSS clone	`C`	clone	-	23417095	-93
TSS clone	`T`	clone	-	23417081	-79
TSS clone	`T`	clone	-	23417077	-75
TSS clone	`G`	clone	-	23417066	-64
TSS clone	`G`	clone	-	23417065	-63
TSS clone	`G`	clone	-	23417054	-52
TSS clone	`A`	clone	-	23417044	-42
TSS clone	`A`	clone	-	23417022	-20
TSS clone	`G`	clone	-	23417018	-16
TSS clone	`G`	clone	-	23417017	-15
TSS clone	`G`	clone	-	23417014	-12
TSS clone	`T`	clone	-	23417005	-3

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTTCTTCCCTCTTCTC - 23417024 23417042 -22 -40

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTTCTTCCCTCTTCTC`	-	23417024	23417042	-22	-40
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TGAGCCCATGGGCTCA - 23417193 23417208 -191 -206

AtREG485 TGAGCCCATGGGCTCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG591     CCCATGGG     PPDB Motif GCCCA, CCATGG PLACE Motif

AtREG507    GCCCATGGGC    PPDB Motif GCCCA, CCATGG PLACE Motif

REG ATTTGGGCCAAT - 23417218 23417229 -216 -227

AtREG421 ATTTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420   TTGGGCCA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484    TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG446     GGGCCAAT CK PPDB Motif GCCCA PLACE Motif GGGCC

REG CAAAACGCCCAATA - 23417235 23417248 -233 -246

AtREG585 CAAAACGC       PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG650 AAAACGCC      PPDB Motif AAACG(C/G) PLACE Motif

AtREG355       GCCCAATA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TGAGCCCATGGGCTCA`		-	23417193	23417208	-191	-206
	AtREG485	`TGAGCCCATGGGCTCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG591	`CCCATGGG`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
	AtREG507	`GCCCATGGGC`		PPDB Motif	`GCCCA, CCATGG`	PLACE Motif
REG	`ATTTGGGCCAAT`		-	23417218	23417229	-216	-227
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TTGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG446	`GGGCCAAT`	CK	PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
REG	`CAAAACGCCCAATA`		-	23417235	23417248	-233	-246
	AtREG585	`CAAAACGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
	AtREG650	`AAAACGCC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG355	`GCCCAATA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone + 23417313 AT3G63420.1, AT3G63420.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	+	23417313	AT3G63420.1, AT3G63420.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None