Summary of Gene (AT4G01290.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G01290.1 5'->3' (-) Promoter sequence AT4G01330.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 543867 | -585 |
TSS clone peak | A | clone | - | 543857 | -575 |
TSS clone | A | clone | - | 543841 | -559 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCTT | - | 543873 | 543881 | -591 | -599 |
Y Patch | CTCTTCTT | - | 543900 | 543907 | -618 | -625 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGCGCGTG | - | 543945 | 543952 | -663 | -670 | |||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
REG | AGCGCGTGA | - | 543969 | 543977 | -687 | -695 | |||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 2 | + | 550554 | AT4G01330.1 |
TSS peak | A | 4 | + | 550687 | AT4G01330.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTTCTCT | + | 550556 | 550564 | AT4G01330.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGTCCCAC | + | 550278 | 550285 | AT4G01330.1 | ||||
AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGTCATTT | + | 550316 | 550323 | AT4G01330.1 | ||||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTCCGGTTC | + | 550539 | 550548 | AT4G01330.1 | ||||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CGTCATTT | + | 550582 | 550589 | AT4G01330.1 | ||||
AtREG657 | CGTCATTT | PPDB Motif |   | PLACE Motif |   |