Summary of Gene (AT4G01320.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G01320.1 5'->3' (+) Promoter sequence AT4G01310.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | + | 545802 | -103 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 545796 | -109 |
TSS clone | A | clone | + | 545804 | -101 |
TSS clone | G | clone | + | 545829 | -76 |
TSS clone | C | clone | + | 545844 | -61 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTTT | + | 545808 | 545816 | -97 | -89 |
Y Patch | CTTTCTTC | + | 545830 | 545837 | -75 | -68 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTAAGGCCCCAATAT | + | 545624 | 545638 | -281 | -267 | |||
AtREG577 | CTAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | TAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG509 | CCCAATAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATATGGGCCTAAA | + | 545693 | 545705 | -212 | -200 | |||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG360 | GGGCCTAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATTTGGGCTTC | + | 545722 | 545732 | -183 | -173 | |||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG476 | TGGGCTTC | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | - | 545500 | AT4G01310.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 545547 | AT4G01310.1 |
TSS clone | A | clone | - | 545534 | AT4G01310.1 |
TSS clone | A | clone | - | 545531 | AT4G01310.1 |
TSS clone | C | clone | - | 545511 | AT4G01310.1 |
TSS clone | C | clone | - | 545506 | AT4G01310.1 |
TSS clone | C | clone | - | 545504 | AT4G01310.1 |
TSS clone | T | clone | - | 545499 | AT4G01310.1 |
TSS clone | C | clone | - | 545495 | AT4G01310.1 |
TSS clone | G | clone | - | 545491 | AT4G01310.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTTC | - | 545467 | 545474 | AT4G01310.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATATTGGGGCCTTAG | - | 545624 | 545638 | AT4G01310.1 | ||||
AtREG509 | ATATTGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG577 | GGCCTTAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTAGGCCCATAT | - | 545693 | 545705 | AT4G01310.1 | ||||
AtREG430 | TTTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG360 | TTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAAGCCCAAAT | - | 545722 | 545732 | AT4G01310.1 | ||||
AtREG476 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG469 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |