PlantPromoterDB promoter information of AT4G01328.1
Summary of Gene (AT4G01328.1)
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Overview
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Focused view (chromosome 4: 551376-550177)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G01328.1 5'->3' (-) Promoter sequence AT4G01330.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G01328.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | + | 550554 | AT4G01330.1 |
| TSS peak | A | 4 | + | 550687 | AT4G01330.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTCT | + | 550556 | 550564 | AT4G01330.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGTCCCAC | + | 550278 | 550285 | AT4G01330.1 | ||||
| AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CGTCATTT | + | 550316 | 550323 | AT4G01330.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||
| REG | TTTCCGGTTC | + | 550539 | 550548 | AT4G01330.1 | ||||
| AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CGTCATTT | + | 550582 | 550589 | AT4G01330.1 | ||||
| AtREG657 | CGTCATTT | PPDB Motif | PLACE Motif | ||||||