PlantPromoterDB promoter information of AT4G01870.1

Summary of Gene (AT4G01870.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G01870 TAIR NCBI
Gene model	AT4G01870.1
Description	tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21680.1); Has 4671 Blast hits to 3161 proteins in 698 species: Archae - 22; Bacteria - 2093; Metazoa - 16; Fungi - 28; Plants - 63; Viruses - 0; Other Eukaryotes - 2449 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 799231-798032)

`Genome position from initiation codon` `AT4G01850.1 AT4G01850.2 TSS from cDNA TSS information AT4G01870.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G01870.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 811250 -819

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	811250	-819

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 810446 -15

TSS clone T clone - 810445 -14

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	810446	-15
TSS clone	`T`	clone	-	810445	-14

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAGCCCAGTA - 811428 811438 -997 -1007

AtREG376 AAAGCCCA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG434 GCCCAGTA PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAGCCCAGTA`		-	811428	811438	-997	-1007
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG434	`GCCCAGTA`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 98 - 798280 AT4G01850.1, AT4G01850.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	98	-	798280	AT4G01850.1, AT4G01850.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 798282 AT4G01850.1, AT4G01850.2

TSS clone G clone - 798280 AT4G01850.1, AT4G01850.2

TSS clone T clone - 798279 AT4G01850.1, AT4G01850.2

TSS clone C clone - 798278 AT4G01850.1, AT4G01850.2

TSS clone C clone - 798277 AT4G01850.1, AT4G01850.2

TSS clone C clone - 798276 AT4G01850.1, AT4G01850.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	798282	AT4G01850.1, AT4G01850.2
TSS clone	`G`	clone	-	798280	AT4G01850.1, AT4G01850.2
TSS clone	`T`	clone	-	798279	AT4G01850.1, AT4G01850.2
TSS clone	`C`	clone	-	798278	AT4G01850.1, AT4G01850.2
TSS clone	`C`	clone	-	798277	AT4G01850.1, AT4G01850.2
TSS clone	`C`	clone	-	798276	AT4G01850.1, AT4G01850.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TCCCTATAAATA - 798307 798318 AT4G01850.1, AT4G01850.2

Y Patch TTCCTTCTTC - 798258 798267 AT4G01850.1, AT4G01850.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCCCTATAAATA`	-	798307	798318	AT4G01850.1, AT4G01850.2
Y Patch	`TTCCTTCTTC`	-	798258	798267	AT4G01850.1, AT4G01850.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGACGTG - 798486 798493 AT4G01850.1, AT4G01850.2

AtREG466 GTGACGTG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG