Summary of Gene (AT4G01870.1)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G01870.1 5'->3' (-) Promoter sequence AT4G01900.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 811250 | -819 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 810446 | -15 |
TSS clone | T | clone | - | 810445 | -14 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGCCCAGTA | - | 811428 | 811438 | -997 | -1007 | |||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG434 | GCCCAGTA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 13 | + | 821679 | AT4G01900.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 821685 | AT4G01900.1 |
TSS clone | G | clone | + | 821686 | AT4G01900.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCTTC | + | 821652 | 821659 | AT4G01900.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTAAACCGA | + | 821554 | 821562 | AT4G01900.1 | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTAAACCGGAAA | + | 821564 | 821575 | AT4G01900.1 | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTAAACCGGTTTT | + | 821588 | 821600 | AT4G01900.1 | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CTAAACCGACT | + | 821606 | 821616 | AT4G01900.1 | ||||
AtREG511 | CTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG641 | AACCGACT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  |