PlantPromoterDB promoter information of AT4G01940.1
Summary of Gene (AT4G01940.1)
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Overview
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Focused view (chromosome 4: 844388-843189)
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Genome position
from initiation codon TSS from cDNA TSS information AT4G01940.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G01940.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 843396 | -8 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 843459 | -71 |
| TSS clone | A | clone | - | 843433 | -45 |
| TSS clone | A | clone | - | 843396 | -8 |
| TSS clone | T | clone | - | 843395 | -7 |
| TSS clone | A | clone | - | 843391 | -3 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTC | - | 843374 | 843381 | 14 | 7 |
| Y Patch | TTCTTCTT | - | 843435 | 843442 | -47 | -54 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCGGCCCATTT | - | 843527 | 843538 | -139 | -150 | |||
| AtREG555 | ATCGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG393 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG380 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG386 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAAAAGCC | - | 843549 | 843556 | -161 | -168 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGACACGTGTCT | - | 843588 | 843599 | -200 | -211 | |||
| AtREG478 | CGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG470 | ACGTGTCT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | AAAGTCAA | - | 843637 | 843644 | -249 | -256 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||