Summary of Gene (AT4G02230.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT4G02230.1 5'->3' (-) Promoter sequence AT4G02235.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | C | 26 | - | 980645 | -5 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 980670 | -30 |
TSS clone | T | clone | - | 980669 | -29 |
TSS clone | C | clone | - | 980667 | -27 |
TSS clone | T | clone | - | 980666 | -26 |
TSS clone | C | clone | - | 980662 | -22 |
TSS clone | A | clone | - | 980660 | -20 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCTTC | - | 980664 | 980672 | -24 | -32 |
Y Patch | TCTTCTTC | - | 980679 | 980686 | -39 | -46 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCCTAGA | - | 980710 | 980717 | -70 | -77 | |||
AtREG658 | ACCCTAGA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | AAAGCCCAATTA | - | 980746 | 980757 | -106 | -117 | |||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG418 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGGCCTATAATGGGCTTAG | - | 980761 | 980779 | -121 | -139 | |||
AtREG649 | AGGCCTAT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG487 | GGCCTATA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG546 | ATAATGGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG634 | GGGCTTAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGTGTAC | - | 980803 | 980810 | -163 | -170 | |||
AtREG562 | ACGTGTAC | ABA, Auxin | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |