PlantPromoterDB promoter information of AT4G02380
Summary of Gene (AT4G02380)
|
Overview
|
Focused view (chromosome 4: 1047807-1046608)
|
Genome position
from initiation codon AT4G02380.2 TSS from cDNA TSS information AT4G02380 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT4G02380
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 1046994 | -187 |
| TSS peak | A | 21 | - | 1046870 | -63 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 1046997 | -190 |
| TSS clone | T | clone | - | 1046996 | -189 |
| TSS clone | C | clone | - | 1046995 | -188 |
| TSS clone | A | clone | - | 1046994 | -187 |
| TSS clone | T | clone | - | 1046993 | -186 |
| TSS clone | A | clone | - | 1046986 | -179 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATATCT | - | 1046888 | 1046895 | -81 | -88 |
| TATA Box | CTCCTATATAAACC | - | 1047019 | 1047032 | -212 | -225 |
| Y Patch | TTTCTCTCTTT | - | 1046831 | 1046841 | -24 | -34 |
| Y Patch | TCTCTCCTTCT | - | 1046880 | 1046890 | -73 | -83 |
| Y Patch | CCTTCCTCTCCTCTTCCTCTCTTCTC | - | 1046995 | 1047020 | -188 | -213 |
| Y Patch | CTCTCTCCT | - | 1047028 | 1047036 | -221 | -229 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCGTTTA | - | 1047092 | 1047099 | -285 | -292 | |||
| AtREG613 | GCCGTTTA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CAAAGGCC | - | 1047112 | 1047119 | -305 | -312 | |||
| AtREG656 | CAAAGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GGGTCAAA | - | 1047125 | 1047132 | -318 | -325 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
| REG | TTGACTTT | - | 1047162 | 1047169 | -355 | -362 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||