PlantPromoterDB promoter information of AT4G02600

Summary of Gene (AT4G02600)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G02600 TAIR NCBI
Gene model	AT4G02600
Description	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).

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Overview

Focused view (chromosome 4: 1139341-1140540)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G02600 5'->3' (+) Promoter sequence AT4G02590.1 AT4G02590.2 AT4G02590.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G02600

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 8 + 1143993 -148

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	8	+	1143993	-148

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 1143962 -179

TSS clone G clone + 1143990 -151

TSS clone T clone + 1144000 -141

TSS clone T clone + 1144002 -139

TSS clone C clone + 1144005 -136

TSS clone T clone + 1144017 -124

TSS clone A clone + 1144041 -100

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	1143962	-179
TSS clone	`G`	clone	+	1143990	-151
TSS clone	`T`	clone	+	1144000	-141
TSS clone	`T`	clone	+	1144002	-139
TSS clone	`C`	clone	+	1144005	-136
TSS clone	`T`	clone	+	1144017	-124
TSS clone	`A`	clone	+	1144041	-100

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTCTCTTCCT + 1144017 1144031 -124 -110

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTCTCTTCCT`	+	1144017	1144031	-124	-110
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAACGCGTTT + 1143785 1143795 -356 -346

AtREG566 AAAACGCG PPDB Motif AAACG(C/G) PLACE Motif

AtREG633 AAACGCGTTT PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAACGCGTTT`		+	1143785	1143795	-356	-346
	AtREG566	`AAAACGCG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG633	`AAACGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 4 - 1140491 AT4G02590.1, AT4G02590.2, AT4G02590.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	4	-	1140491	AT4G02590.1, AT4G02590.2, AT4G02590.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone - 1140490 AT4G02590.1, AT4G02590.2, AT4G02590.3

TSS clone T clone - 1140458 AT4G02590.1, AT4G02590.2, AT4G02590.3

TSS clone A clone - 1140421 AT4G02590.1, AT4G02590.2, AT4G02590.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	-	1140490	AT4G02590.1, AT4G02590.2, AT4G02590.3
TSS clone	`T`	clone	-	1140458	AT4G02590.1, AT4G02590.2, AT4G02590.3
TSS clone	`A`	clone	-	1140421	AT4G02590.1, AT4G02590.2, AT4G02590.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTTATAAACA - 1140518 1140527 AT4G02590.1, AT4G02590.2, AT4G02590.3

Y Patch TCTTCTTC - 1140466 1140473 AT4G02590.1, AT4G02590.2, AT4G02590.3

Y Patch CTCCTTTC - 1140483 1140490 AT4G02590.1, AT4G02590.2, AT4G02590.3

Y Patch TTTCTTCT - 1140492 1140499 AT4G02590.1, AT4G02590.2, AT4G02590.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTTATAAACA`	-	1140518	1140527	AT4G02590.1, AT4G02590.2, AT4G02590.3
Y Patch	`TCTTCTTC`	-	1140466	1140473	AT4G02590.1, AT4G02590.2, AT4G02590.3
Y Patch	`CTCCTTTC`	-	1140483	1140490	AT4G02590.1, AT4G02590.2, AT4G02590.3
Y Patch	`TTTCTTCT`	-	1140492	1140499	AT4G02590.1, AT4G02590.2, AT4G02590.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None