Summary of Gene (AT4G02600)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G02600 5'->3' (+) Promoter sequence AT4G02590.1
AT4G02590.2 AT4G02590.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 1143993 | -148 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 1143962 | -179 |
TSS clone | G | clone | + | 1143990 | -151 |
TSS clone | T | clone | + | 1144000 | -141 |
TSS clone | T | clone | + | 1144002 | -139 |
TSS clone | C | clone | + | 1144005 | -136 |
TSS clone | T | clone | + | 1144017 | -124 |
TSS clone | A | clone | + | 1144041 | -100 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTCTCTTCCT | + | 1144017 | 1144031 | -124 | -110 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAACGCGTTT | + | 1143785 | 1143795 | -356 | -346 | |||
AtREG566 | AAAACGCG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG633 | AAACGCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | - | 1140491 | AT4G02590.1, AT4G02590.2, AT4G02590.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | - | 1140490 | AT4G02590.1, AT4G02590.2, AT4G02590.3 |
TSS clone | T | clone | - | 1140458 | AT4G02590.1, AT4G02590.2, AT4G02590.3 |
TSS clone | A | clone | - | 1140421 | AT4G02590.1, AT4G02590.2, AT4G02590.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATAAACA | - | 1140518 | 1140527 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | |
Y Patch | TCTTCTTC | - | 1140466 | 1140473 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | |
Y Patch | CTCCTTTC | - | 1140483 | 1140490 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | |
Y Patch | TTTCTTCT | - | 1140492 | 1140499 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGCCCATTTA | - | 1140622 | 1140631 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG386 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG443 | CCCATTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAGGCCCATAT | - | 1140673 | 1140683 | AT4G02590.1, AT4G02590.2, AT4G02590.3 | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   |