Summary of Gene (AT4G02610.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT4G02610.1 5'->3' (+) Promoter sequence AT4G02620.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 1146931 | -731 |
TSS clone peak | G | clone | + | 1147634 | -28 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 42 | - | 1151336 | AT4G02620.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 1151322 | AT4G02620.1 |
TSS clone | T | clone | - | 1151321 | AT4G02620.1 |
TSS clone | A | clone | - | 1151308 | AT4G02620.1 |
TSS clone peak | G | clone | + | 1151613 | AT4G02630.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCAGGGGTAA | - | 1151401 | 1151410 | AT4G02620.1 | ||||
AtREG595 | TCAGGGGT | CK | PPDB Motif | ACCCCT  | PLACE Motif |   | |||
AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT  | PLACE Motif |   |