Summary of Gene (AT4G03180.1)
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Overview |
Genome position
from initiation codon AT4G03200.2 TSS from cDNA TSS information AT4G03180.1 5'->3' (+) Promoter sequence AT4G03190.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 1403205 | -84 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCTCCTTTC | + | 1403215 | 1403229 | -74 | -60 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGGCTTATTGGGCAAGCCCAATAT | + | 1403009 | 1403034 | -280 | -255 | |||
AtREG518 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG611 | CTTATTGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG525 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | TATTGGGC GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG509 | CCCAATAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAGGGTAT | + | 1403128 | 1403136 | -161 | -153 | |||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG623 | AAGGGTAT | PPDB Motif | ACCCT  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | - | 1407132 | AT4G03190.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 1407139 | AT4G03190.1 |
TSS clone | A | clone | - | 1407137 | AT4G03190.1 |
TSS clone | G | clone | - | 1407136 | AT4G03190.1 |
TSS clone peak | A | clone | + | 1408159 | AT4G03200.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATATATATC | - | 1407160 | 1407171 | AT4G03190.1 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCCAATTA | + | 1407949 | 1407956 | AT4G03200.1 | ||||
AtREG600 | CCCAATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TACACGTGTCAC | + | 1408132 | 1408143 | AT4G03200.2 | ||||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG498 | CGTGTCAC | ABA | PPDB Motif |   | PLACE Motif |   | |||
REG | AACGACGTCGTTTT | + | 1408251 | 1408264 | AT4G03200.2 | ||||
AtREG493 | AACGACGTCGTT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG431 | ACGACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG520 | GTCGTTTT | PPDB Motif |   | PLACE Motif |   |