Summary of Gene (AT4G03205.1)
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Overview |
Genome position
from initiation codon AT4G03210.2 TSS from cDNA TSS information AT4G03205.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | + | 1412221 | -593 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 1411928 | -886 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 42 | + | 1415952 | AT4G03210.1, AT4G03210.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 1415950 | AT4G03210.1, AT4G03210.2 |
TSS clone | A | clone | + | 1415952 | AT4G03210.1, AT4G03210.2 |
TSS clone | T | clone | + | 1415953 | AT4G03210.1, AT4G03210.2 |
TSS clone | A | clone | + | 1415961 | AT4G03210.1, AT4G03210.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTTTATAAAGC | + | 1415915 | 1415926 | AT4G03210.1, AT4G03210.2 | |
Y Patch | CCTCTCTCTCTT | + | 1415931 | 1415942 | AT4G03210.1, AT4G03210.2 | |
Y Patch | TCTCCTTC | + | 1415944 | 1415951 | AT4G03210.1, AT4G03210.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCACACGT | + | 1415841 | 1415848 | AT4G03210.1, AT4G03210.2 | ||||
AtREG588 | TCACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | CTACGTGGCAT | + | 1415855 | 1415865 | AT4G03210.1, AT4G03210.2 | ||||
AtREG495 | CTACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG413 | TACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  |