PlantPromoterDB promoter information of AT4G03270.1

Summary of Gene (AT4G03270.1)

Organism	Arabidopsis thaliana
Chromosome	4
Locus	AT4G03270 TAIR NCBI
Gene model	AT4G03270.1
Description	Cyclin D6;1 (CYCD6;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCD4;1 (CYCLIN D4;1); cyclin-dependent protein kinase regulator (TAIR:AT5G65420.1); Has 1530 Blast hits to 1529 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 865; Fungi - 23; Plants - 542; Viruses - 2; Other Eukaryotes - 98 (source: NCBI BLink).

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Overview

Focused view (chromosome 4: 1440691-1439492)

`Genome position from initiation codon` `TSS from cDNA TSS information AT4G03270.1 5'->3' (-) Promoter sequence AT4G03280.1 AT4G03280.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT4G03270.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 51 + 1440219 AT4G03280.1, AT4G03280.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	51	+	1440219	AT4G03280.1, AT4G03280.2

TSS information from cDNA

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	1440164	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440168	AT4G03280.1, AT4G03280.2
TSS clone	`G`	clone	+	1440173	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440174	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440176	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440184	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440185	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440187	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440191	AT4G03280.1, AT4G03280.2
TSS clone	`A`	clone	+	1440210	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440213	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440214	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440215	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440220	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440222	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440234	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440235	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440237	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440240	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440247	AT4G03280.1, AT4G03280.2
TSS clone	`A`	clone	+	1440248	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440252	AT4G03280.1, AT4G03280.2
TSS clone	`G`	clone	+	1440277	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440280	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440281	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440282	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440283	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440284	AT4G03280.1, AT4G03280.2
TSS clone	`G`	clone	+	1440285	AT4G03280.1, AT4G03280.2
TSS clone	`G`	clone	+	1440286	AT4G03280.1, AT4G03280.2
TSS clone	`A`	clone	+	1440289	AT4G03280.1, AT4G03280.2
TSS clone	`A`	clone	+	1440290	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440299	AT4G03280.1, AT4G03280.2
TSS clone	`T`	clone	+	1440300	AT4G03280.1, AT4G03280.2
TSS clone	`C`	clone	+	1440306	AT4G03280.1, AT4G03280.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTCTCTCTCTCC + 1440187 1440199 AT4G03280.1, AT4G03280.2

Y Patch TCCTCCTCC + 1440237 1440245 AT4G03280.1, AT4G03280.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTCTCTCTCTCC`	+	1440187	1440199	AT4G03280.1, AT4G03280.2
Y Patch	`TCCTCCTCC`	+	1440237	1440245	AT4G03280.1, AT4G03280.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAAATGGGCTA + 1440004 1440014 AT4G03280.1, AT4G03280.2

AtREG443 TAAATGGG    PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC   PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG581    ATGGGCTA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TCAGCCCAATAAGGCCCAC + 1440027 1440045 AT4G03280.1, AT4G03280.2

AtREG609 TCAGCCCA            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG402   AGCCCAAT          PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG355    GCCCAATA         PPDB Motif GCCCA PLACE Motif

AtREG417     CCCAATAA        PPDB Motif GCCCA PLACE Motif

AtREG611      CCAATAAG       PPDB Motif PLACE Motif

AtREG425         ATAAGGCC    PPDB Motif AACCG(G/A) PLACE Motif

AtREG351          TAAGGCCC   PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353           AAGGCCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG482            AGGCCCAC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATTGGCCCGTT + 1440085 1440095 AT4G03280.1, AT4G03280.2

AtREG446 ATTGGCCC    CK PPDB Motif GCCCA PLACE Motif GGGCC

AtREG401    GGCCCGTT PPDB Motif AAACG(C/G), ACGGGC, CCAACGG PLACE Motif GGGCC

REG TAAGCCCATTAAG + 1440097 1440109 AT4G03280.1, AT4G03280.2

AtREG426 TAAGCCCA      PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG357    GCCCATTA   PPDB Motif GCCCA PLACE Motif

AtREG396     CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG

AtREG604      CCATTAAG PPDB Motif PLACE Motif TTAATGG

REG GGCGCGTG + 1440170 1440177 AT4G03280.1, AT4G03280.2

AtREG486 GGCGCGTG PPDB Motif ACGCGC PLACE Motif