PlantPromoterDB promoter information of AT4G03280
Summary of Gene (AT4G03280)
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Overview
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Focused view (chromosome 4: 1439314-1440513)
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Genome position
from initiation codon AT4G03280.2 TSS from cDNA TSS information AT4G03280 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT4G03280
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 51 | + | 1440219 | -95 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 1440164 | -150 |
| TSS clone | C | clone | + | 1440168 | -146 |
| TSS clone | G | clone | + | 1440173 | -141 |
| TSS clone | C | clone | + | 1440174 | -140 |
| TSS clone | T | clone | + | 1440176 | -138 |
| TSS clone | C | clone | + | 1440184 | -130 |
| TSS clone | T | clone | + | 1440185 | -129 |
| TSS clone | C | clone | + | 1440187 | -127 |
| TSS clone | T | clone | + | 1440191 | -123 |
| TSS clone | A | clone | + | 1440210 | -104 |
| TSS clone | C | clone | + | 1440213 | -101 |
| TSS clone | T | clone | + | 1440214 | -100 |
| TSS clone | C | clone | + | 1440215 | -99 |
| TSS clone | T | clone | + | 1440220 | -94 |
| TSS clone | T | clone | + | 1440222 | -92 |
| TSS clone | T | clone | + | 1440234 | -80 |
| TSS clone | C | clone | + | 1440235 | -79 |
| TSS clone | T | clone | + | 1440237 | -77 |
| TSS clone | T | clone | + | 1440240 | -74 |
| TSS clone | C | clone | + | 1440247 | -67 |
| TSS clone | A | clone | + | 1440248 | -66 |
| TSS clone | T | clone | + | 1440252 | -62 |
| TSS clone | G | clone | + | 1440277 | -37 |
| TSS clone | T | clone | + | 1440280 | -34 |
| TSS clone | T | clone | + | 1440281 | -33 |
| TSS clone | T | clone | + | 1440282 | -32 |
| TSS clone | T | clone | + | 1440283 | -31 |
| TSS clone | C | clone | + | 1440284 | -30 |
| TSS clone | G | clone | + | 1440285 | -29 |
| TSS clone | G | clone | + | 1440286 | -28 |
| TSS clone | A | clone | + | 1440289 | -25 |
| TSS clone | A | clone | + | 1440290 | -24 |
| TSS clone | C | clone | + | 1440299 | -15 |
| TSS clone | T | clone | + | 1440300 | -14 |
| TSS clone | C | clone | + | 1440306 | -8 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTCTCTCTCC | + | 1440187 | 1440199 | -127 | -115 |
| Y Patch | TCCTCCTCC | + | 1440237 | 1440245 | -77 | -69 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAATGGGCTA | + | 1440004 | 1440014 | -310 | -300 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG581 | ATGGGCTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | TCAGCCCAATAAGGCCCAC | + | 1440027 | 1440045 | -287 | -269 | |||
| AtREG609 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG355 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG417 | CCCAATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG611 | CCAATAAG | PPDB Motif | PLACE Motif | ||||||
| AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG351 | TAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG482 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | ATTGGCCCGTT | + | 1440085 | 1440095 | -229 | -219 | |||
| AtREG446 | ATTGGCCC | CK | PPDB Motif | GCCCA | PLACE Motif | GGGCC | |||
| AtREG401 | GGCCCGTT | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG | PLACE Motif | GGGCC | ||||
| REG | TAAGCCCATTAAG | + | 1440097 | 1440109 | -217 | -205 | |||
| AtREG426 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG372 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG604 | CCATTAAG | PPDB Motif | PLACE Motif | TTAATGG | |||||
| REG | GGCGCGTG | + | 1440170 | 1440177 | -144 | -137 | |||
| AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||